Variant report

Variant	rs1729831
Chromosome Location	chr7:52764733-52764734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10214958	0.83[ASN][1000 genomes]
rs11977330	0.81[EUR][1000 genomes]
rs1230549	0.80[EUR][1000 genomes]
rs12540503	0.84[ASN][1000 genomes]
rs1528999	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1529001	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1529002	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1618391	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1622771	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1623421	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1623443	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1623616	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1625454	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1627324	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627344	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1629417	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1629716	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1631113	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1631139	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1631945	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649703	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649704	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649707	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649709	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1649715	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649716	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1649719	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649720	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649721	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1649722	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649723	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649724	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649725	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1649726	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649727	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1649730	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649731	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649733	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1649734	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649735	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1649736	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1649737	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649738	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1649739	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1649740	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1661629	0.82[EUR][1000 genomes]
rs1661630	0.82[EUR][1000 genomes]
rs1729830	0.82[EUR][1000 genomes]
rs1729832	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1729833	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729834	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1729835	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729836	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1729837	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729838	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729840	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729841	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729842	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729843	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729850	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729851	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729853	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729854	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1729857	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2698256	0.82[EUR][1000 genomes]
rs28454662	0.83[ASN][1000 genomes]
rs4947747	0.84[ASN][1000 genomes]
rs67604530	0.82[ASN][1000 genomes]
rs749356	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs749357	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs749359	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs749360	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7790712	0.82[ASN][1000 genomes]
rs7806644	0.84[ASN][1000 genomes]
rs890635	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs890636	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019211	chr7:52706930-52785302	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52758400-52777200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:52763200-52764800	Enhancers	Brain Germinal Matrix	brain
3	chr7:52764400-52769200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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