Variant report

Variant	rs1729857
Chromosome Location	chr7:52786126-52786127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:52785933..52787584-chr7:52789855..52792602,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10214958	0.92[ASN][1000 genomes]
rs10215086	0.80[ASN][1000 genomes]
rs11238229	0.82[ASN][1000 genomes]
rs11238230	0.82[ASN][1000 genomes]
rs11974892	0.82[ASN][1000 genomes]
rs11977330	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1230547	0.85[EUR][1000 genomes]
rs1230549	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12540503	0.90[ASN][1000 genomes]
rs12668035	0.80[ASN][1000 genomes]
rs1528999	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529001	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1529002	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1618391	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1622771	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1623421	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1623443	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1623616	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1625454	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1627324	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1627344	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1629417	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1629716	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1631113	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1631139	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1631945	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649703	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649704	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649707	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649709	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649715	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649716	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1649719	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649720	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649721	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1649722	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649723	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649724	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649725	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649726	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649727	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1649730	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649731	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649733	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1649734	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649735	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649736	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1649737	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649738	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1649739	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729831	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1729833	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729834	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729835	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729836	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1729837	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729838	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729840	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729841	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729842	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729843	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729850	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729851	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729853	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1729854	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1978593	0.80[ASN][1000 genomes]
rs28454662	0.92[ASN][1000 genomes]
rs4418303	0.80[ASN][1000 genomes]
rs4947747	0.90[ASN][1000 genomes]
rs60716577	0.80[ASN][1000 genomes]
rs67604530	0.88[ASN][1000 genomes]
rs749356	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs749357	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs749359	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs749360	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7777290	0.80[ASN][1000 genomes]
rs7790364	0.85[ASN][1000 genomes]
rs7790712	0.88[ASN][1000 genomes]
rs7806644	0.89[ASN][1000 genomes]
rs890635	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs890636	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019722	chr7:52767403-52800721	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv538842	chr7:52767403-52800721	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52783800-52787400	Weak transcription	Pancreas	Pancrea
2	chr7:52785600-52804400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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