Variant report

Variant	rs17299124
Chromosome Location	chr11:64256859-64256860
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10897508	1.00[ASN][1000 genomes]
rs11231816	1.00[YRI][hapmap]
rs4930420	1.00[YRI][hapmap]
rs4930423	1.00[YRI][hapmap]
rs4930426	1.00[YRI][hapmap]
rs55962027	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7124676	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs17299124	EIF1AD	cis	parietal	SCAN
rs17299124	NUDT22	cis	cerebellum	SCAN
rs17299124	MARK2	cis	parietal	SCAN
rs17299124	ADRBK1	cis	cerebellum	SCAN
rs17299124	SNORD25	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64252400-64257000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:64252600-64257200	Weak transcription	Brain Germinal Matrix	brain
3	chr11:64252800-64257200	Weak transcription	K562	blood
4	chr11:64254800-64257200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:64255600-64257200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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