Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64311826..64313393-chr11:64315068..64317928,2	MCF-7	breast:
2	11:64307888-64312302..11:64426650-64437729	K562	blood:
3	11:64307888-64312302..11:64523887-64530985	Hela-S3	cervix:
4	11:64307888-64312302..11:64402707-64415880	H1-hESC	embryonic stem cell:	embryo
5	11:64307888-64312302..11:64415880-64426617	H1-hESC	embryonic stem cell:	embryo
6	11:64207610-64216678..11:64307888-64312302	K562	blood:
7	11:64307888-64312302..11:64501239-64517861	Hela-S3	cervix:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11231808	0.82[AMR][1000 genomes]
rs11231814	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231815	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11231816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362644	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12363578	0.92[ASN][1000 genomes]
rs17372915	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs2078267	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs2164495	1.00[ASN][1000 genomes]
rs34484509	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34812986	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4930194	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4930195	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4930420	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930426	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6591859	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7102027	0.85[ASN][1000 genomes]
rs7124676	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71456318	1.00[ASN][1000 genomes]
rs7936185	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv897692	chr11:64305452-64386526	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64307400-64315600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:64310400-64313000	Weak transcription	Esophagus	oesophagus
3	chr11:64310600-64313000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:64310600-64314400	Enhancers	NHEK	skin
5	chr11:64310800-64312000	Weak transcription	Hela-S3	cervix
6	chr11:64311000-64312200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:64311000-64312200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:64311200-64312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:64311200-64312200	Weak transcription	Placenta	Placenta
10	chr11:64311800-64314400	Enhancers	HMEC	breast

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