Variant report

Variant	rs34484509
Chromosome Location	chr11:64299110-64299111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11231808	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11231814	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231816	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12363578	0.92[ASN][1000 genomes]
rs12417589	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12789978	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17372915	0.92[ASN][1000 genomes]
rs2078267	0.92[ASN][1000 genomes]
rs2164495	1.00[ASN][1000 genomes]
rs34812986	1.00[ASN][1000 genomes]
rs4930194	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4930420	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930423	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4930426	1.00[ASN][1000 genomes]
rs7102027	0.85[ASN][1000 genomes]
rs7123852	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7124676	1.00[ASN][1000 genomes]
rs71456318	1.00[ASN][1000 genomes]
rs7936185	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64292800-64304000	Weak transcription	Right Atrium	heart
2	chr11:64293800-64299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:64293800-64299400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:64297800-64299600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:64299000-64300600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:64299000-64303000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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