Variant report
| Variant | rs34812986 |
|---|---|
| Chromosome Location | chr11:64314634-64314635 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:12)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:12 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 11:64312302-64322633..11:64538326-64543055 | K562 | blood: | |
| 2 | 11:64312302-64322633..11:64426650-64437729 | K562 | blood: | |
| 3 | 11:64312302-64322633..11:64517861-64519906 | K562 | blood: | |
| 4 | 11:64312302-64322633..11:64489786-64499245 | K562 | blood: | |
| 5 | 11:64312302-64322633..11:64523887-64530985 | Hela-S3 | cervix: | |
| 6 | 11:64312302-64322633..11:64356433-64395036 | K562 | blood: | |
| 7 | 11:64312302-64322633..11:64402707-64415880 | Hela-S3 | cervix: | |
| 8 | chr11:64314373..64316707-chr11:64321089..64323298,2 | K562 | blood: | |
| 9 | 11:64312302-64322633..11:64501239-64517861 | K562 | blood: | |
| 10 | 11:64312302-64322633..11:64642645-64655002 | K562 | blood: | |
| 11 | 11:64312302-64322633..11:64415880-64426617 | H1-hESC | embryonic stem cell: | embryo |
| 12 | 11:64207610-64216678..11:64312302-64322633 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197891 | Chromatin interaction |
| ENSG00000168066 | Chromatin interaction |
| ENSG00000110047 | Chromatin interaction |
| ENSG00000237410 | Chromatin interaction |
| ENSG00000110076 | Chromatin interaction |
| ENSG00000068976 | Chromatin interaction |
| ENSG00000181908 | Chromatin interaction |
| ENSG00000230835 | Chromatin interaction |
| ENSG00000068831 | Chromatin interaction |
| ENSG00000168065 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11231814 | 1.00[ASN][1000 genomes] |
| rs11231816 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231822 | 0.81[EUR][1000 genomes] |
| rs12363578 | 0.92[ASN][1000 genomes] |
| rs12808503 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17300741 | 0.83[EUR][1000 genomes] |
| rs17300895 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17372915 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2078267 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2164495 | 1.00[ASN][1000 genomes] |
| rs2277312 | 0.90[EUR][1000 genomes] |
| rs34484509 | 1.00[ASN][1000 genomes] |
| rs3759053 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs3782099 | 0.87[EUR][1000 genomes] |
| rs4930194 | 0.92[ASN][1000 genomes] |
| rs4930420 | 1.00[ASN][1000 genomes] |
| rs4930423 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4930426 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57827982 | 0.85[EUR][1000 genomes] |
| rs7102027 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7124676 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71456318 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7929308 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7936185 | 1.00[ASN][1000 genomes] |
| rs7940321 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7943154 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035485 | chr11:64228847-64354869 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv897692 | chr11:64305452-64386526 | Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv897693 | chr11:64305452-64440920 | Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 4 | esv2422214 | chr11:64312491-64483418 | Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:64307400-64315600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr11:64314000-64315000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
