Variant report

Variant	rs7929308
Chromosome Location	chr11:64329106-64329107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11231808	0.81[ASN][1000 genomes]
rs11231815	0.97[ASN][1000 genomes]
rs11231822	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362644	0.97[ASN][1000 genomes]
rs12417589	0.81[ASN][1000 genomes]
rs12808503	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300741	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300895	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17372915	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2078267	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2277312	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34812986	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3759053	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3782099	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930195	0.97[ASN][1000 genomes]
rs4930426	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57827982	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6591859	0.97[ASN][1000 genomes]
rs7102027	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7123852	0.81[ASN][1000 genomes]
rs7124676	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71456318	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7940321	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943154	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897692	chr11:64305452-64386526	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64322800-64334000	Weak transcription	Right Atrium	heart
2	chr11:64323000-64333400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:64323800-64332600	Weak transcription	Pancreas	Pancrea
4	chr11:64326200-64333200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:64328000-64332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:64328000-64332600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:64328000-64332600	Weak transcription	Spleen	Spleen
8	chr11:64328000-64332800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:64328000-64333000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:64328000-64333400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:64328000-64333600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:64328000-64333600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:64328200-64332600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:64328200-64333000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:64328200-64333400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:64328400-64331400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:64328400-64332400	Weak transcription	HepG2	liver
18	chr11:64328400-64332600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:64328400-64332600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:64328600-64331400	Weak transcription	Placenta	Placenta
21	chr11:64328800-64329600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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