Variant report

Variant	rs17300888
Chromosome Location	chr10:6509035-6509036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6505890..6509656-chr10:6511670..6513697,3	K562	blood:
2	chr10:6505614..6509391-chr10:6621600..6624464,4	K562	blood:
3	chr10:6506203..6509391-chr10:6621600..6624464,3	K562	blood:
4	chr10:6506742..6509620-chr10:6514468..6518206,3	K562	blood:
5	chr10:6505591..6508029-chr10:6509016..6510529,2	K562	blood:
6	chr10:6505761..6513673-chr10:6513705..6518581,11	K562	blood:
7	chr10:6507153..6509656-chr10:6510822..6513697,3	K562	blood:

Variant related genes	Relation type
ENSG00000065675	Chromatin interaction
ENSG00000237943	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11258586	1.00[ASN][1000 genomes]
rs11258802	1.00[ASN][1000 genomes]
rs12146362	1.00[ASN][1000 genomes]
rs12355507	1.00[ASN][1000 genomes]
rs12358161	1.00[ASN][1000 genomes]
rs4748095	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510745	1.00[ASN][1000 genomes]
rs56051527	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602722	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069322	1.00[ASN][1000 genomes]
rs7080157	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083579	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095942	1.00[ASN][1000 genomes]
rs7096751	1.00[ASN][1000 genomes]
rs72781722	1.00[ASN][1000 genomes]
rs72781739	1.00[ASN][1000 genomes]
rs72781746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781747	1.00[ASN][1000 genomes]
rs72781754	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72781757	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781770	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783703	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6493400-6516200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:6496200-6511600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:6496200-6513000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:6496200-6514000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:6496200-6514200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:6496200-6514600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:6496600-6539200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:6497600-6513200	Strong transcription	Primary T cells from cord blood	blood
9	chr10:6498400-6537000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:6498600-6510000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:6498600-6512000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:6498600-6518800	Weak transcription	Fetal Stomach	stomach
13	chr10:6499000-6527800	Weak transcription	Pancreas	Pancrea
14	chr10:6499200-6562000	Weak transcription	Brain Anterior Caudate	brain
15	chr10:6500200-6510200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:6501000-6513800	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr10:6501400-6510000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr10:6501600-6527200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:6501800-6509200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:6501800-6509400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:6501800-6511000	Weak transcription	Aorta	Aorta
22	chr10:6501800-6513800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:6501800-6513800	Strong transcription	Fetal Thymus	thymus
24	chr10:6501800-6557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:6502000-6511200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:6502200-6518800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:6503000-6513000	Weak transcription	Psoas Muscle	Psoas
28	chr10:6503000-6533000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:6503200-6510200	Strong transcription	Thymus	Thymus
30	chr10:6503200-6513600	Strong transcription	Dnd41	blood
31	chr10:6503200-6513800	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr10:6503200-6516000	Weak transcription	Brain Angular Gyrus	brain
33	chr10:6503600-6509400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:6504200-6517200	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:6504400-6518200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:6504600-6524200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:6506000-6515400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:6506200-6509600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:6506200-6516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:6506200-6516200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:6506200-6520400	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:6507600-6515400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:6507800-6511200	Weak transcription	K562	blood
44	chr10:6508200-6509800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
45	chr10:6508200-6510400	Enhancers	Fetal Intestine Small	intestine
46	chr10:6508400-6510200	Enhancers	Fetal Kidney	kidney
47	chr10:6508400-6510400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:6508600-6509800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:6508600-6511800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:6508800-6509200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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