Variant report

Variant	rs7096751
Chromosome Location	chr10:6438493-6438494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6437383..6440179-chr10:6448797..6450334,2	MCF-7	breast:
2	chr10:6242682..6246426-chr10:6435409..6441608,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction
ENSG00000213994	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11258536	1.00[LWK][hapmap]
rs11258586	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11258802	1.00[ASN][1000 genomes]
rs12146362	1.00[ASN][1000 genomes]
rs12355507	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12358161	0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs17300888	1.00[ASN][1000 genomes]
rs2453	1.00[LWK][hapmap]
rs4748095	1.00[ASN][1000 genomes]
rs510745	1.00[ASN][1000 genomes]
rs56051527	1.00[ASN][1000 genomes]
rs6602722	1.00[ASN][1000 genomes]
rs7069322	1.00[ASN][1000 genomes]
rs7080157	1.00[ASN][1000 genomes]
rs7083579	1.00[ASN][1000 genomes]
rs7095942	0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72777876	1.00[ASN][1000 genomes]
rs72781722	1.00[ASN][1000 genomes]
rs72781739	1.00[ASN][1000 genomes]
rs72781746	1.00[ASN][1000 genomes]
rs72781747	1.00[ASN][1000 genomes]
rs72781757	1.00[ASN][1000 genomes]
rs72781770	1.00[ASN][1000 genomes]
rs72783703	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6425600-6443600	Weak transcription	Aorta	Aorta
2	chr10:6431400-6439200	Weak transcription	Thymus	Thymus
3	chr10:6433800-6448600	Weak transcription	Primary T cells from cord blood	blood
4	chr10:6434600-6443600	Weak transcription	Fetal Brain Female	brain
5	chr10:6436400-6441400	Weak transcription	Fetal Lung	lung
6	chr10:6436400-6443600	Weak transcription	Fetal Kidney	kidney
7	chr10:6436600-6443400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:6436600-6443400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:6436800-6440400	Weak transcription	Brain Substantia Nigra	brain
10	chr10:6437200-6444000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:6437600-6439400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr10:6437600-6444400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:6437800-6439600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:6438000-6439000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:6438200-6439200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:6438200-6439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:6438200-6439200	Enhancers	A549	lung
18	chr10:6438200-6439400	Enhancers	NHDF-Ad	bronchial
19	chr10:6438400-6438600	Enhancers	Primary B cells from cord blood	blood
20	chr10:6438400-6438600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr10:6438400-6439200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:6438400-6439400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:6438400-6439600	Enhancers	HMEC	breast

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