Variant report

Variant	rs17301375
Chromosome Location	chr5:43009529-43009530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr5:43007595-43010060	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr5:43009178-43010197	MCF-7	breast:	n/a	n/a
3	POLR2A	chr5:43007544-43009843	GM12878	blood:	n/a	n/a
4	POLR2A	chr5:43007479-43009782	IMR90	lung:	n/a	n/a
5	CEBPB	chr5:43009167-43009698	K562	blood:	n/a	n/a
6	POLR2A	chr5:43007338-43010590	PANC-1	pancreas:	n/a	n/a
7	POLR2A	chr5:43009129-43010153	SK-N-SH	brain:	n/a	n/a
8	JUND	chr5:43007496-43009547	K562	blood:	n/a	chr5:43007667-43007675 chr5:43009342-43009349 chr5:43007667-43007675 chr5:43007667-43007674 chr5:43007665-43007676
9	TBL1XR1	chr5:43009296-43009760	GM12878	blood:	n/a	n/a
10	ELK1	chr5:43009265-43009840	Hela-S3	cervix:	n/a	n/a
11	IRF1	chr5:43009420-43010060	K562	blood:	n/a	chr5:43009577-43009591 chr5:43009577-43009591 chr5:43009576-43009589 chr5:43009572-43009593 chr5:43009576-43009596 chr5:43009576-43009590 chr5:43009576-43009589 chr5:43009578-43009589 chr5:43009575-43009589 chr5:43009576-43009589 chr5:43009575-43009592 chr5:43009578-43009592 chr5:43009577-43009590
12	MAX	chr5:43007456-43010047	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr5:43009442-43010531	HepG2	liver:	n/a	n/a
14	RFX5	chr5:43007460-43010092	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr5:43009479-43009814	HUVEC	blood vessel:	n/a	n/a
16	TAF1	chr5:43009502-43009859	SK-N-SH	brain:	n/a	n/a
17	MYC	chr5:43007402-43011171	NB4	blood:	n/a	n/a
18	POLR2A	chr5:43007525-43010794	NB4	blood:	n/a	n/a
19	CUX1	chr5:43008819-43009573	GM12878	blood:	n/a	n/a
20	ZNF384	chr5:43009218-43009755	GM12878	blood:	n/a	n/a
21	POLR2A	chr5:43007400-43010832	GM12878	blood:	n/a	n/a
22	ATF2	chr5:43007386-43009807	GM12878	blood:	n/a	n/a
23	POLR2A	chr5:43009095-43009996	GM12891	blood:	n/a	n/a
24	SMARCB1	chr5:43007281-43009916	Hela-S3	cervix:	n/a	n/a
25	TCF12	chr5:43007195-43009876	A549	lung:	n/a	n/a
26	RCOR1	chr5:43009301-43009636	K562	blood:	n/a	n/a
27	POLR2A	chr5:43007388-43009806	GM12891	blood:	n/a	n/a
28	CEBPB	chr5:43007613-43010152	IMR90	lung:	n/a	chr5:43008518-43008529
29	RELA	chr5:43007580-43010082	GM15510	blood:	n/a	n/a
30	POLR2A	chr5:43007337-43010908	GM18526	blood:	n/a	n/a
31	POLR2A	chr5:43007364-43011130	GM19099	blood:	n/a	n/a
32	MTA3	chr5:43009378-43011233	GM12878	blood:	n/a	n/a
33	ZNF143	chr5:43009520-43009910	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr5:43009160-43010058	A549	lung:	n/a	n/a
35	POLR2A	chr5:43007407-43011245	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr5:43007514-43009981	K562	blood:	n/a	n/a
37	POLR2A	chr5:43007481-43010091	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr5:43007245-43009936	HUVEC	blood vessel:	n/a	n/a
39	ATF2	chr5:43007968-43009724	GM12878	blood:	n/a	n/a
40	RELA	chr5:43007501-43011195	GM12891	blood:	n/a	n/a
41	STAT3	chr5:43009180-43009766	MCF10A-Er-Src	breast:	n/a	chr5:43009578-43009589 chr5:43009254-43009262
42	POLR2A	chr5:43007367-43010979	GM12892	blood:	n/a	n/a
43	CUX1	chr5:43008732-43009548	K562	blood:	n/a	n/a
44	ARID3A	chr5:43008609-43009694	HepG2	liver:	n/a	chr5:43009437-43009453
45	SMARCC1	chr5:43007370-43010378	Hela-S3	cervix:	n/a	n/a
46	IRF3	chr5:43009191-43009960	Hela-S3	cervix:	n/a	chr5:43009577-43009591 chr5:43009577-43009591 chr5:43009576-43009589 chr5:43009572-43009593 chr5:43009576-43009596 chr5:43009576-43009590 chr5:43009576-43009589 chr5:43009578-43009589 chr5:43009575-43009589 chr5:43009576-43009589 chr5:43009575-43009592 chr5:43009578-43009592 chr5:43009577-43009590
47	STAT3	chr5:43007718-43010316	GM12878	blood:	n/a	chr5:43009001-43009013 chr5:43009578-43009589 chr5:43009254-43009262
48	MAX	chr5:43007422-43010109	NB4	blood:	n/a	n/a
49	STAT3	chr5:43009159-43009945	MCF10A-Er-Src	breast:	n/a	chr5:43009578-43009589 chr5:43009254-43009262
50	POLR2A	chr5:43009273-43009988	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:62608655..62609646-chr5:43009445..43010034,2	NB4	blood:
2	chr5:43007547..43009866-chr5:43041551..43043821,3	MCF-7	breast:
3	chr5:43009440..43010973-chr5:43027450..43029658,2	MCF-7	breast:
4	chr5:42908654..42910895-chr5:43006900..43010047,5	MCF-7	breast:
5	chr5:43008402..43009658-chr5:43064918..43066427,5	Hela-S3	cervix:
6	chr5:42996039..42998077-chr5:43007869..43010510,2	MCF-7	breast:
7	chr5:43006860..43010287-chr5:43063692..43067440,8	K562	blood:
8	chr5:43008745..43011043-chr5:43025523..43027908,2	K562	blood:
9	chr5:41858867..41861426-chr5:43009217..43011345,2	K562	blood:
10	chr5:42976709..42979278-chr5:43008290..43010781,3	K562	blood:
11	chr5:43006330..43010322-chr5:43119527..43123237,8	MCF-7	breast:
12	chr5:43005892..43011349-chr5:43037590..43043804,20	K562	blood:
13	chr5:42928813..42931600-chr5:43007922..43010335,2	MCF-7	breast:
14	chr5:43006162..43011722-chr5:43063736..43068779,9	MCF-7	breast:
15	chr5:43007851..43010366-chr5:43021276..43023527,2	K562	blood:
16	chr5:42912159..42915403-chr5:43007665..43011079,4	MCF-7	breast:
17	chr5:43008478..43012422-chr5:43036002..43039064,3	MCF-7	breast:
18	chr5:43006765..43010626-chr5:43063692..43068627,9	K562	blood:
19	chr5:43005189..43014948-chr5:43062554..43069130,17	MCF-7	breast:
20	chr5:42911324..42913004-chr5:43008845..43010689,2	K562	blood:
21	chr5:43007396..43009600-chr5:43120111..43123066,2	K562	blood:
22	chr5:42908870..42911135-chr5:43009033..43010803,2	K562	blood:
23	chr5:43008295..43011216-chr5:43016929..43019962,5	K562	blood:
24	chr5:43005322..43013124-chr5:43037748..43043287,15	K562	blood:
25	chr5:43007330..43009530-chr5:43039640..43043303,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271788	TF binding region
ENSG00000251656	Chromatin interaction
ENSG00000251131	Chromatin interaction
ENSG00000215068	Chromatin interaction
ENSG00000177738	Chromatin interaction
ENSG00000177721	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000172262	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10058374	0.94[JPT][hapmap]
rs10074873	0.94[JPT][hapmap]
rs10075647	0.88[JPT][hapmap]
rs10078527	0.84[JPT][hapmap]
rs1032434	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10454865	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10805667	0.94[JPT][hapmap]
rs10941607	0.96[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10941608	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11550285	0.95[ASN][1000 genomes]
rs11550286	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11550287	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11740797	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11742691	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11743246	0.83[ASN][1000 genomes]
rs11747015	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11748187	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11750239	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11949817	0.96[ASN][1000 genomes]
rs11954543	0.83[ASN][1000 genomes]
rs11956243	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188691	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13155513	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13159703	0.94[ASN][1000 genomes]
rs13165504	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13169563	0.94[ASN][1000 genomes]
rs13173064	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13665	0.94[JPT][hapmap]
rs1532331	0.94[JPT][hapmap]
rs2452831	0.96[ASN][1000 genomes]
rs316398	0.81[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs316405	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs316409	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs316410	0.96[ASN][1000 genomes]
rs316411	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs316418	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3207358	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34087147	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34315422	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34492794	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34670023	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34808919	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34859360	0.92[ASN][1000 genomes]
rs35085573	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35541316	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35953019	0.94[JPT][hapmap]
rs36039989	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36083302	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3733839	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3797312	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3849698	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3849699	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4498259	0.94[JPT][hapmap]
rs493097	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs504404	0.85[ASN][1000 genomes]
rs541143	0.94[JPT][hapmap]
rs55939188	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56169202	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs581914	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62367685	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62367688	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372869	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6414900	0.94[JPT][hapmap]
rs6451674	0.94[JPT][hapmap]
rs6451675	0.94[JPT][hapmap]
rs670206	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6859096	0.81[ASN][1000 genomes]
rs6862639	0.94[JPT][hapmap]
rs6864223	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871636	0.94[JPT][hapmap]
rs6884303	0.94[JPT][hapmap]
rs6894506	0.94[JPT][hapmap]
rs7709181	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727892	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7729529	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730004	0.94[JPT][hapmap]
rs9790935	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
7	nsv1029288	chr5:42928085-43047323	Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	120 gene(s)	inside rSNPs	diseases
8	nsv968169	chr5:42956713-43043472	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	116 gene(s)	inside rSNPs	diseases
9	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
10	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
11	nsv880447	chr5:42967215-43030798	Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
12	nsv881640	chr5:42978644-43028221	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
13	nsv880415	chr5:42978644-43030798	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17301375	ZNF131	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43007000-43009800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:43007200-43009600	Active TSS	HSMMtube	muscle
3	chr5:43007200-43009800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:43007200-43010000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
5	chr5:43007200-43010000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr5:43007200-43010200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:43007200-43010200	Bivalent/Poised TSS	Left Ventricle	heart
8	chr5:43007200-43010400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
9	chr5:43007200-43010800	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr5:43007400-43009600	Bivalent/Poised TSS	Fetal Kidney	kidney
11	chr5:43007400-43009800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:43007400-43009800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
13	chr5:43007400-43009800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
14	chr5:43007400-43009800	Active TSS	Ovary	ovary
15	chr5:43007400-43010000	Bivalent/Poised TSS	Liver	Liver
16	chr5:43007400-43010000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
17	chr5:43007400-43010000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
18	chr5:43007400-43010000	Active TSS	Esophagus	oesophagus
19	chr5:43007400-43010200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
20	chr5:43007400-43010400	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr5:43007400-43010600	Bivalent/Poised TSS	Psoas Muscle	Psoas
22	chr5:43007400-43010800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:43007600-43009600	Active TSS	Monocytes-CD14+_RO01746	blood
24	chr5:43007600-43009800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr5:43007600-43009800	Active TSS	NHDF-Ad	bronchial
26	chr5:43007600-43010000	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr5:43007600-43010000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:43007600-43010000	Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr5:43007600-43010000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:43007600-43010000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
31	chr5:43007600-43010000	Active TSS	Thymus	Thymus
32	chr5:43007800-43009600	Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr5:43007800-43009600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:43007800-43009800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:43007800-43009800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr5:43007800-43009800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:43007800-43009800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
38	chr5:43007800-43009800	Active TSS	A549	lung
39	chr5:43007800-43009800	Active TSS	Dnd41	blood
40	chr5:43007800-43009800	Active TSS	GM12878-XiMat	blood
41	chr5:43007800-43009800	Active TSS	HSMM	muscle
42	chr5:43007800-43009800	Active TSS	Osteobl	bone
43	chr5:43007800-43010000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr5:43007800-43010000	Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr5:43007800-43010000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr5:43007800-43010000	Active TSS	Duodenum Mucosa	Duodenum
47	chr5:43007800-43010200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
48	chr5:43007800-43010200	Active TSS	Right Ventricle	heart
49	chr5:43007800-43010200	Active TSS	NHLF	lung
50	chr5:43008000-43009600	Bivalent/Poised TSS	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links