Variant report
| Variant | rs173060 |
|---|---|
| Chromosome Location | chr4:142921028-142921029 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10018891 | 0.90[EUR][1000 genomes] |
| rs10519621 | 0.90[EUR][1000 genomes] |
| rs1845971 | 0.90[EUR][1000 genomes] |
| rs1912713 | 0.90[EUR][1000 genomes] |
| rs1912714 | 0.90[EUR][1000 genomes] |
| rs1912715 | 0.90[EUR][1000 genomes] |
| rs1988510 | 0.90[EUR][1000 genomes] |
| rs1988511 | 0.90[EUR][1000 genomes] |
| rs2645809 | 0.90[EUR][1000 genomes] |
| rs2645825 | 0.90[EUR][1000 genomes] |
| rs2645827 | 0.90[EUR][1000 genomes] |
| rs2645828 | 0.90[EUR][1000 genomes] |
| rs2667082 | 0.90[EUR][1000 genomes] |
| rs2667087 | 0.90[EUR][1000 genomes] |
| rs2667088 | 0.90[EUR][1000 genomes] |
| rs2667089 | 0.90[EUR][1000 genomes] |
| rs2667090 | 0.90[EUR][1000 genomes] |
| rs2667091 | 0.90[EUR][1000 genomes] |
| rs2667120 | 0.90[EUR][1000 genomes] |
| rs336337 | 0.90[EUR][1000 genomes] |
| rs336338 | 0.90[EUR][1000 genomes] |
| rs336339 | 0.90[EUR][1000 genomes] |
| rs336340 | 0.90[EUR][1000 genomes] |
| rs336341 | 0.90[EUR][1000 genomes] |
| rs336343 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs336344 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs336345 | 0.90[EUR][1000 genomes] |
| rs336347 | 0.90[EUR][1000 genomes] |
| rs336348 | 0.90[EUR][1000 genomes] |
| rs336351 | 0.90[EUR][1000 genomes] |
| rs336352 | 0.90[EUR][1000 genomes] |
| rs336354 | 0.90[EUR][1000 genomes] |
| rs336355 | 0.90[EUR][1000 genomes] |
| rs336356 | 0.90[EUR][1000 genomes] |
| rs336357 | 0.90[EUR][1000 genomes] |
| rs336358 | 0.90[EUR][1000 genomes] |
| rs336359 | 0.90[EUR][1000 genomes] |
| rs336360 | 0.90[EUR][1000 genomes] |
| rs336362 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs336363 | 0.90[EUR][1000 genomes] |
| rs337232 | 1.00[EUR][1000 genomes] |
| rs6848572 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027004 | chr4:142487721-143007320 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv498005 | chr4:142515689-143502988 | Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | esv3489411 | chr4:142865824-142926421 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3489412 | chr4:142865824-142926421 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv830096 | chr4:142867099-143023761 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv3378753 | chr4:142886396-142940399 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:142920600-142921200 | Enhancers | Fetal Heart | heart |
| 2 | chr4:142921000-142922000 | Weak transcription | K562 | blood |
