Variant report

Variant	rs337232
Chromosome Location	chr4:142920006-142920007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10018891	0.90[EUR][1000 genomes]
rs10519621	0.90[EUR][1000 genomes]
rs173060	1.00[EUR][1000 genomes]
rs1845971	0.90[EUR][1000 genomes]
rs1912713	0.90[EUR][1000 genomes]
rs1912714	0.90[EUR][1000 genomes]
rs1912715	0.90[EUR][1000 genomes]
rs1988510	0.90[EUR][1000 genomes]
rs1988511	0.90[EUR][1000 genomes]
rs2645809	0.90[EUR][1000 genomes]
rs2645825	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2645827	0.90[EUR][1000 genomes]
rs2645828	0.90[EUR][1000 genomes]
rs2667082	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2667087	0.90[EUR][1000 genomes]
rs2667088	0.90[EUR][1000 genomes]
rs2667089	0.90[EUR][1000 genomes]
rs2667090	0.90[EUR][1000 genomes]
rs2667091	0.90[EUR][1000 genomes]
rs2667120	0.90[EUR][1000 genomes]
rs336337	0.90[EUR][1000 genomes]
rs336338	0.90[EUR][1000 genomes]
rs336339	0.90[EUR][1000 genomes]
rs336340	0.90[EUR][1000 genomes]
rs336341	0.90[EUR][1000 genomes]
rs336343	0.90[EUR][1000 genomes]
rs336344	0.90[EUR][1000 genomes]
rs336345	0.90[EUR][1000 genomes]
rs336347	0.90[EUR][1000 genomes]
rs336348	0.90[EUR][1000 genomes]
rs336351	0.90[EUR][1000 genomes]
rs336352	0.90[EUR][1000 genomes]
rs336354	0.90[EUR][1000 genomes]
rs336355	0.90[EUR][1000 genomes]
rs336356	0.90[EUR][1000 genomes]
rs336357	0.90[EUR][1000 genomes]
rs336358	0.90[EUR][1000 genomes]
rs336359	0.90[EUR][1000 genomes]
rs336360	0.90[EUR][1000 genomes]
rs336362	0.90[EUR][1000 genomes]
rs336363	0.90[EUR][1000 genomes]
rs6848572	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3489411	chr4:142865824-142926421	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3489412	chr4:142865824-142926421	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830096	chr4:142867099-143023761	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3378753	chr4:142886396-142940399	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142920000-142921000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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