Variant report

Variant	rs17309391
Chromosome Location	chr11:26762505-26762506
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10501066	0.98[ASN][1000 genomes]
rs12420546	0.98[ASN][1000 genomes]
rs16916200	0.98[ASN][1000 genomes]
rs4923384	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72884864	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72884871	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73438479	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv983164	chr11:26743632-26793942	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1036747	chr11:26758984-26781674	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26756800-26762600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:26762200-26763000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:26762400-26763000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:26762400-26763200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:26762400-26763400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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