Variant report

Variant	rs17317715
Chromosome Location	chr4:105828766-105828767
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11935593	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13111362	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13129874	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13131272	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13137011	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13142183	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34034051	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34086469	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35283499	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4264829	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71599033	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105825800-105828800	Enhancers	Fetal Muscle Leg	muscle
2	chr4:105826800-105830800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:105827400-105828800	Enhancers	Fetal Heart	heart
4	chr4:105828200-105828800	Enhancers	Fetal Brain Male	brain
5	chr4:105828400-105840000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:105828600-105828800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:105828600-105828800	Flanking Active TSS	Liver	Liver
8	chr4:105828600-105828800	Enhancers	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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