Variant report

Variant	rs11935593
Chromosome Location	chr4:105849384-105849385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10005603	0.82[CEU][hapmap]
rs11943066	0.82[CEU][hapmap]
rs12710977	0.82[CEU][hapmap]
rs13111362	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13129874	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13131272	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13137011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13142183	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17317715	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34034051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34086469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35283499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35757985	0.85[AMR][1000 genomes]
rs4264829	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71599033	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105847800-105851800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:105848000-105852000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:105849000-105849400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr4:105849200-105849800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr4:105849200-105851400	ZNF genes & repeats	Liver	Liver
6	chr4:105849200-105852800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:105849200-105852800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links