Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:105841835..105846942-chr4:106065904..106068988,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168769	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10008364	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023520	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097872	1.00[ASN][1000 genomes]
rs11935593	0.82[CEU][hapmap]
rs11943066	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12331635	1.00[ASN][1000 genomes]
rs12710977	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111362	0.82[CEU][hapmap]
rs13129874	0.82[CEU][hapmap]
rs13131272	0.82[CEU][hapmap]
rs13142183	0.82[CEU][hapmap]
rs17035104	1.00[ASN][1000 genomes]
rs17035107	1.00[ASN][1000 genomes]
rs17239412	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046879	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28611049	1.00[ASN][1000 genomes]
rs28631735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866762	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756097	1.00[ASN][1000 genomes]
rs28821492	1.00[ASN][1000 genomes]
rs7654991	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695587	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993343	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Tuberculosis	20694014	GWAS catalog

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105841400-105849200	Weak transcription	Liver	Liver

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