Variant report

Variant	rs11943066
Chromosome Location	chr4:105826900-105826901
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:105826196..105828454-chr4:105887675..105890383,3	MCF-7	breast:
2	chr4:105825123..105826942-chr4:106178075..106179720,2	MCF-7	breast:
3	chr4:105823235..105830393-chr4:106065333..106069817,8	MCF-7	breast:
4	chr4:105812145..105831361-chr4:106062414..106073665,101	MCF-7	breast:
5	chr4:105825267..105827143-chr4:105834814..105836639,2	MCF-7	breast:
6	chr4:105825440..105827404-chr4:105844322..105846191,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168769	Chromatin interaction
ENSG00000248242	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10005603	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10008364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10018423	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10023520	1.00[EUR][1000 genomes]
rs10031416	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10034768	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11935593	0.82[CEU][hapmap]
rs12331635	1.00[CHB][hapmap]
rs12710977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13111362	0.82[CEU][hapmap]
rs13129874	0.82[CEU][hapmap]
rs13131272	0.82[CEU][hapmap]
rs13142183	0.82[CEU][hapmap]
rs13435073	1.00[ASN][1000 genomes]
rs13435195	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17035094	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17035104	1.00[CHB][hapmap]
rs17035107	1.00[CHB][hapmap]
rs17239412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2046879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28413517	1.00[ASN][1000 genomes]
rs28430435	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28462029	1.00[ASN][1000 genomes]
rs28521501	1.00[ASN][1000 genomes]
rs28583917	1.00[ASN][1000 genomes]
rs28631735	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28647898	1.00[ASN][1000 genomes]
rs2866762	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28670737	1.00[ASN][1000 genomes]
rs28704480	1.00[ASN][1000 genomes]
rs61460258	1.00[ASN][1000 genomes]
rs72963277	1.00[ASN][1000 genomes]
rs72963284	1.00[ASN][1000 genomes]
rs72963285	1.00[ASN][1000 genomes]
rs7654991	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7695587	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9993343	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105818600-105827400	Weak transcription	HSMMtube	muscle
2	chr4:105822400-105828000	Enhancers	Fetal Brain Male	brain
3	chr4:105823000-105828200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:105823400-105827400	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:105825800-105828800	Enhancers	Fetal Muscle Leg	muscle
6	chr4:105826000-105827400	Enhancers	Liver	Liver
7	chr4:105826000-105828200	Enhancers	Brain Germinal Matrix	brain
8	chr4:105826200-105828200	Enhancers	Fetal Brain Female	brain
9	chr4:105826200-105828600	Enhancers	Fetal Lung	lung
10	chr4:105826800-105827000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:105826800-105830800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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