Variant report
| Variant | rs72963284 |
|---|---|
| Chromosome Location | chr4:105807958-105807959 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:105807196..105809660-chr4:105887378..105889912,4 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CXXC4-4 | chr4:105807275-105808112 | NONHSAT097655 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248242 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10018423 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10031416 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10034768 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11097872 | 1.00[EUR][1000 genomes] |
| rs11943066 | 1.00[ASN][1000 genomes] |
| rs12331635 | 1.00[EUR][1000 genomes] |
| rs13435073 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13435195 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17035094 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17035104 | 1.00[EUR][1000 genomes] |
| rs17035107 | 1.00[EUR][1000 genomes] |
| rs28413517 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28430435 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28462029 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28521501 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28583917 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28611049 | 1.00[EUR][1000 genomes] |
| rs28647898 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28670737 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28704480 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28756097 | 1.00[EUR][1000 genomes] |
| rs28821492 | 1.00[EUR][1000 genomes] |
| rs61460258 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72963277 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72963285 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9993343 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3341748 | chr4:105569622-105903733 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv3388659 | chr4:105613526-105882646 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
