Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:105820943..105824661-chr4:105886383..105889616,8	MCF-7	breast:
2	chr4:105812145..105831361-chr4:106062414..106073665,101	MCF-7	breast:
3	chr4:105813077..105824325-chr4:105883194..105896586,62	MCF-7	breast:
4	chr4:105820758..105822834-chr4:106065872..106068799,3	MCF-7	breast:
5	chr4:105818029..105819642-chr4:105819966..105823375,3	MCF-7	breast:
6	chr4:105819730..105822198-chr4:105833841..105836097,2	MCF-7	breast:
7	chr4:105817499..105822928-chr4:105976984..105982661,7	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10018423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097872	1.00[EUR][1000 genomes]
rs11943066	1.00[ASN][1000 genomes]
rs12331635	1.00[EUR][1000 genomes]
rs13435073	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17035094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17035104	1.00[EUR][1000 genomes]
rs17035107	1.00[EUR][1000 genomes]
rs28413517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28430435	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28462029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28583917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28611049	1.00[EUR][1000 genomes]
rs28670737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704480	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756097	1.00[EUR][1000 genomes]
rs28821492	1.00[EUR][1000 genomes]
rs61460258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673338	0.88[AMR][1000 genomes]
rs9993343	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105817600-105822600	Weak transcription	Fetal Brain Female	brain
2	chr4:105818600-105827400	Weak transcription	HSMMtube	muscle
3	chr4:105819000-105822400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:105819000-105822600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:105819200-105822400	Weak transcription	Fetal Brain Male	brain
6	chr4:105819200-105822600	Weak transcription	NH-A	brain
7	chr4:105819800-105822600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:105821400-105821800	ZNF genes & repeats	GM12878-XiMat	blood

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