Variant report

Variant	rs7673338
Chromosome Location	chr4:105824803-105824804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10018423	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs10031416	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs10034768	1.00[CEU][hapmap]
rs12331635	1.00[CEU][hapmap]
rs13435073	1.00[CEU][hapmap]
rs13435195	1.00[CEU][hapmap]
rs17035094	1.00[CEU][hapmap]
rs17035104	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17035107	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs28430435	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs28647898	0.88[AMR][1000 genomes]
rs9993343	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105818600-105827400	Weak transcription	HSMMtube	muscle
2	chr4:105822400-105828000	Enhancers	Fetal Brain Male	brain
3	chr4:105823000-105828200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:105823400-105827400	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:105823600-105825800	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:105823600-105826000	Weak transcription	Brain Germinal Matrix	brain
7	chr4:105823800-105826200	Weak transcription	Fetal Lung	lung
8	chr4:105824000-105826800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:105824200-105826200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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