Variant report

Variant	rs10031416
Chromosome Location	chr4:105817308-105817309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:105816670..105820478-chr4:105886248..105889956,9	MCF-7	breast:
2	chr4:105782254..105784617-chr4:105816368..105819349,2	MCF-7	breast:
3	chr4:105812145..105831361-chr4:106062414..106073665,101	MCF-7	breast:
4	chr4:105816989..105819992-chr4:105827283..105830507,3	MCF-7	breast:
5	chr4:105813077..105824325-chr4:105883194..105896586,62	MCF-7	breast:
6	chr4:105814793..105820597-chr4:106056553..106061582,9	MCF-7	breast:
7	chr12:53298344..53299845-chr4:105814753..105817436,2	MCF-7	breast:
8	chr4:105812272..105820662-chr4:106063772..106071132,26	MCF-7	breast:
9	chr4:105806362..105810515-chr4:105814687..105818730,5	MCF-7	breast:
10	chr4:105816661..105820025-chr4:106046680..106052012,4	MCF-7	breast:
11	chr4:105694299..105697088-chr4:105815661..105817452,2	MCF-7	breast:
12	chr4:105802666..105805128-chr4:105815212..105817325,2	MCF-7	breast:
13	chr4:105815219..105817997-chr4:106040124..106042884,2	MCF-7	breast:
14	chr4:105816771..105820576-chr4:106045760..106049308,12	MCF-7	breast:
15	chr4:105816897..105818538-chr4:106042913..106045183,2	MCF-7	breast:
16	chr4:105411566..105413905-chr4:105816090..105818390,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168772	Chromatin interaction
ENSG00000168769	Chromatin interaction
ENSG00000245384	Chromatin interaction
ENSG00000170421	Chromatin interaction
ENSG00000248242	Chromatin interaction
ENSG00000251906	Chromatin interaction
ENSG00000244470	Chromatin interaction
ENSG00000248373	Chromatin interaction
ENSG00000272082	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10008364	1.00[CHB][hapmap]
rs10018423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097872	1.00[EUR][1000 genomes]
rs11943066	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12331635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12710977	1.00[CHB][hapmap]
rs13435073	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17035094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17035104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17035107	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17239412	1.00[CHB][hapmap]
rs2046879	1.00[ASW][hapmap];1.00[CHB][hapmap]
rs28413517	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28430435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28462029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28583917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28611049	1.00[EUR][1000 genomes]
rs28647898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28670737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756097	1.00[EUR][1000 genomes]
rs28821492	1.00[EUR][1000 genomes]
rs61460258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963284	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673338	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs9993343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105816600-105819000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr4:105816600-105819200	Enhancers	Fetal Brain Male	brain
3	chr4:105816800-105819200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:105816800-105819200	Enhancers	Liver	Liver
5	chr4:105816800-105819200	Enhancers	HSMM	muscle
6	chr4:105817200-105817600	Enhancers	Fetal Brain Female	brain

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