Variant report

Variant	rs2046879
Chromosome Location	chr4:105836914-105836915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:105835133..105839017-chr4:105845733..105848373,3	MCF-7	breast:
2	chr4:105836431..105838299-chr4:105892011..105894245,2	MCF-7	breast:
3	chr4:105836565..105838646-chr4:105885942..105889164,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248242	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10005603	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018423	1.00[CHB][hapmap]
rs10023520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031416	1.00[ASW][hapmap];1.00[CHB][hapmap]
rs10034768	1.00[CHB][hapmap]
rs11097872	1.00[ASN][1000 genomes]
rs11943066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331635	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12710977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435195	1.00[CHB][hapmap]
rs17035094	1.00[CHB][hapmap]
rs17035104	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17035107	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17239412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28430435	1.00[CHB][hapmap]
rs28611049	1.00[ASN][1000 genomes]
rs28631735	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756097	1.00[ASN][1000 genomes]
rs28821492	1.00[ASN][1000 genomes]
rs4264829	1.00[MEX][hapmap]
rs7654991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993343	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105828400-105840000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:105836800-105837000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr4:105836800-105837000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
4	chr4:105836800-105837200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr4:105836800-105837200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr4:105836800-105837800	Enhancers	Liver	Liver

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