Variant report

Variant	rs28583917
Chromosome Location	chr4:105799155-105799156
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:105797812..105800583-chr4:106065430..106067062,2	MCF-7	breast:
2	chr4:105798109..105800482-chr4:105886496..105888846,2	MCF-7	breast:
3	chr4:105797387..105799907-chr4:105889706..105891809,2	MCF-7	breast:
4	chr4:105793419..105796662-chr4:105797577..105802143,4	MCF-7	breast:
5	chr4:105798337..105801286-chr4:105817879..105820666,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168769	Chromatin interaction
ENSG00000248242	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10018423	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097872	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11943066	1.00[ASN][1000 genomes]
rs12331635	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13435073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17035094	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17035104	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17035107	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28413517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28430435	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28462029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28611049	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28647898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28670737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704480	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756097	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28821492	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61460258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993343	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105799000-105799200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:105799000-105800000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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