Variant report

Variant	rs17325929
Chromosome Location	chr6:114654688-114654689
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114653028..114655061-chr6:114658099..114660721,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11153476	0.83[ASN][1000 genomes]
rs11962755	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11964902	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11965041	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11968668	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1323047	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1323052	0.95[ASN][1000 genomes]
rs1323053	0.97[ASN][1000 genomes]
rs1323054	0.96[ASN][1000 genomes]
rs1407729	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17326650	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17378311	0.97[ASN][1000 genomes]
rs1819199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2205737	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2224692	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2281012	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2294232	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2349468	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2882105	0.97[ASN][1000 genomes]
rs2882172	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35533566	0.97[ASN][1000 genomes]
rs6926249	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs748420	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7746002	0.83[ASN][1000 genomes]
rs7749363	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9481441	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3692910	chr6:114597419-115480580	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv528128	chr6:114597657-115471129	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv818451	chr6:114597657-115471129	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114646600-114655400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:114650000-114655000	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:114650000-114658200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:114650600-114655000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:114650800-114655200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:114650800-114655200	Weak transcription	Brain Substantia Nigra	brain
7	chr6:114650800-114660400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:114651000-114655400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:114651600-114655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:114651800-114655200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:114652000-114660800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:114652200-114655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:114652200-114655200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:114652400-114655400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:114652400-114655800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:114653600-114654800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:114653800-114655000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:114654000-114659600	Weak transcription	HepG2	liver
19	chr6:114654200-114655200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:114654400-114654800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:114654400-114655600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:114654600-114655000	Weak transcription	Brain Anterior Caudate	brain

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