Variant report

Variant	rs173272
Chromosome Location	chr15:74588380-74588381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1484213	0.82[TSI][hapmap]
rs189499	0.88[TSI][hapmap]
rs2930848	0.88[TSI][hapmap]
rs2959014	0.88[TSI][hapmap]
rs2959015	0.82[TSI][hapmap]
rs2959016	0.88[TSI][hapmap]
rs351207	0.88[TSI][hapmap]
rs351209	0.84[TSI][hapmap]
rs351211	0.88[TSI][hapmap]
rs351214	0.88[TSI][hapmap]
rs4887129	0.85[EUR][1000 genomes]
rs901133	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs173272	SCAMP5	cis	parietal	SCAN
rs173272	SEMA7A	cis	cerebellum	SCAN
rs173272	RPLP1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74584400-74592000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:74584400-74592000	Weak transcription	Spleen	Spleen
4	chr15:74585800-74592400	Weak transcription	Fetal Brain Female	brain
5	chr15:74586000-74592200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:74588200-74588400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:74588200-74588400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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