Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74585941..74588102-chr15:74592216..74594032,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1484213	0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs16967313	0.89[EUR][1000 genomes]
rs173272	0.81[TSI][hapmap]
rs189499	0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs191589	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2930848	0.82[TSI][hapmap]
rs2959014	0.82[TSI][hapmap]
rs2959015	0.88[TSI][hapmap]
rs2959016	0.82[TSI][hapmap]
rs351201	0.81[GIH][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs351204	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs351207	0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs351209	0.81[GIH][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs351210	0.84[EUR][1000 genomes]
rs351211	0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs351214	0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs351215	0.84[EUR][1000 genomes]
rs4887125	0.85[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs57622624	0.89[EUR][1000 genomes]
rs61182982	0.86[EUR][1000 genomes]
rs7163055	0.89[EUR][1000 genomes]
rs73434405	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs901133	RPLP1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74584400-74588000	Enhancers	Brain Germinal Matrix	brain
3	chr15:74584400-74592000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:74584400-74592000	Weak transcription	Spleen	Spleen
5	chr15:74585800-74592400	Weak transcription	Fetal Brain Female	brain
6	chr15:74586000-74592200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:74587200-74587400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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