Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12441994	0.80[EUR][1000 genomes]
rs1484213	0.80[EUR][1000 genomes]
rs16967313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1843366	0.83[ASN][1000 genomes]
rs189499	0.84[EUR][1000 genomes]
rs191589	0.92[EUR][1000 genomes]
rs28395230	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs351199	0.81[EUR][1000 genomes]
rs351201	0.93[EUR][1000 genomes]
rs351204	0.85[EUR][1000 genomes]
rs351207	0.85[EUR][1000 genomes]
rs351209	0.93[EUR][1000 genomes]
rs351210	0.85[EUR][1000 genomes]
rs351211	0.85[EUR][1000 genomes]
rs351214	0.85[EUR][1000 genomes]
rs351215	0.85[EUR][1000 genomes]
rs4886593	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4887123	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4887124	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4887125	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57622624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61182982	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61653296	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73434405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs735980	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs901133	0.89[EUR][1000 genomes]
rs94899	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1035367	chr15:74554972-74586538	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74557000-74561000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74557600-74563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:74557800-74563200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:74557800-74570400	Weak transcription	Fetal Brain Male	brain
5	chr15:74558000-74563400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:74558600-74562000	Weak transcription	Fetal Brain Female	brain

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