Variant report

Variant	rs61653296
Chromosome Location	chr15:74557817-74557818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr15:74557178-74558039	Hela-S3	cervix:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
2	REST	chr15:74556783-74558178	ECC-1	luminal epithelium:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
3	REST	chr15:74557065-74557901	GM12878	blood:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
4	TEAD4	chr15:74557283-74557936	A549	lung:	n/a	n/a
5	REST	chr15:74556939-74558053	PANC-1	pancreas:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
6	REST	chr15:74556534-74558064	H1-hESC	embryonic stem cell:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
7	REST	chr15:74557155-74557920	HL-60	blood:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
8	REST	chr15:74557098-74558129	Hela-S3	cervix:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
9	REST	chr15:74557205-74557869	K562	blood:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
10	REST	chr15:74556799-74558201	PFSK-1	brain:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
11	REST	chr15:74557170-74558033	U87	brain:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
12	REST	chr15:74557036-74558122	HCT-116	colon:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
13	REST	chr15:74556648-74558170	PFSK-1	brain:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
14	REST	chr15:74557240-74557999	H1-hESC	embryonic stem cell:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
15	REST	chr15:74556913-74558116	MCF-7	breast:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
16	REST	chr15:74557021-74558077	A549	lung:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
17	REST	chr15:74556583-74558148	PFSK-1	brain:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
18	REST	chr15:74557189-74557855	HepG2	liver:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
19	REST	chr15:74557113-74557980	MCF-7	breast:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
20	REST	chr15:74557093-74558142	SK-N-SH	brain:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
21	REST	chr15:74557041-74557982	K562	blood:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
22	REST	chr15:74556771-74558148	ECC-1	luminal epithelium:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
23	REST	chr15:74556824-74558119	HL-60	blood:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
24	REST	chr15:74557172-74558031	U87	brain:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
25	REST	chr15:74557202-74558002	HCT-116	colon:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
26	REST	chr15:74557224-74557950	HepG2	liver:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
27	REST	chr15:74557141-74558039	PANC-1	pancreas:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586
28	REST	chr15:74555552-74557904	H1-neurons	neurons:	n/a	chr15:74557566-74557575 chr15:74557574-74557584 chr15:74557567-74557585 chr15:74556945-74556958 chr15:74555689-74555703 chr15:74557566-74557586 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557586 chr15:74557569-74557582 chr15:74557566-74557579 chr15:74557572-74557586

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74556821..74558420-chr15:74583588..74586004,2	MCF-7	breast:

Variant related genes	Relation type
CCDC33	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16967313	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28395230	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs351157	0.81[ASN][1000 genomes]
rs4886593	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4887123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887124	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4887125	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57622624	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61182982	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7163055	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73434405	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs94899	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1035367	chr15:74554972-74586538	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74548600-74558000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:74557000-74560000	Weak transcription	Spleen	Spleen
3	chr15:74557000-74561000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:74557600-74558400	Weak transcription	Fetal Brain Female	brain
5	chr15:74557600-74563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:74557800-74563200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:74557800-74570400	Weak transcription	Fetal Brain Male	brain

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