Variant report

Variant	rs17331230
Chromosome Location	chr7:107891771-107891772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107890613..107892348-chr7:107896221..107898367,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10487842	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10487843	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10953560	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11980184	0.94[CEU][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11980771	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11984362	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12534073	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12534706	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12536606	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12538125	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs1269658	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1269662	0.82[CHB][hapmap]
rs1269663	0.85[CHB][hapmap]
rs12705439	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13228054	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228675	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13231463	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13237289	0.95[CEU][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13242621	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13245910	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13247108	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1548950	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17155187	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17155196	0.95[CEU][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17155335	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs2111203	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191046	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2193252	0.89[EUR][1000 genomes]
rs2193253	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2193254	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2267876	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2267877	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2267878	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2272617	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs2284284	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs2299992	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2299996	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2299999	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2300000	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2300002	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34723270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34754517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55643449	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67133820	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6958333	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6964282	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6977003	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6980041	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71568512	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73199565	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7776972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783282	0.84[AMR][1000 genomes]
rs7784186	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7789291	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7795834	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7796675	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7809003	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887200-107891800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:107887400-107892000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:107887400-107892000	Weak transcription	Pancreas	Pancrea
4	chr7:107887400-107893800	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:107887400-107894000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:107887800-107894000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:107888000-107906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:107888400-107892000	Weak transcription	HSMMtube	muscle
10	chr7:107888400-107892200	Weak transcription	HSMM	muscle
11	chr7:107888600-107892000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:107888600-107892000	Weak transcription	K562	blood
13	chr7:107889400-107892000	Weak transcription	Brain Angular Gyrus	brain
14	chr7:107889400-107893800	Weak transcription	HMEC	breast
15	chr7:107889400-107894200	Weak transcription	Osteobl	bone
16	chr7:107889600-107892000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:107889800-107892000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:107889800-107892000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:107889800-107892000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr7:107889800-107892200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:107890000-107892000	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:107890000-107892200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:107890200-107892000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:107890200-107892000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:107890200-107892000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:107890400-107892000	Enhancers	A549	lung
27	chr7:107890600-107892000	Weak transcription	Brain Anterior Caudate	brain
28	chr7:107891000-107892000	Weak transcription	Brain Substantia Nigra	brain
29	chr7:107891200-107893000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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