Variant report

Variant	rs2111203
Chromosome Location	chr7:107893695-107893696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107893481..107895284-chr7:107986919..107989502,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10487842	0.94[CEU][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs10487843	0.94[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs10953560	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs11980184	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11980771	1.00[CEU][hapmap];0.96[GIH][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11984362	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs12534073	0.94[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs12534706	0.84[EUR][1000 genomes]
rs12536606	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12538125	0.94[CEU][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs1269658	1.00[JPT][hapmap]
rs12705439	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs13228054	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228675	0.84[EUR][1000 genomes]
rs13231463	0.84[EUR][1000 genomes]
rs13237289	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs13242621	0.94[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs13245910	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs13247108	0.94[EUR][1000 genomes]
rs1548950	0.96[EUR][1000 genomes]
rs17155187	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs17155196	0.94[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs17155335	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17331230	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191046	0.81[EUR][1000 genomes]
rs2193252	0.87[EUR][1000 genomes]
rs2193253	0.85[EUR][1000 genomes]
rs2193254	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2267876	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs2267877	0.92[EUR][1000 genomes]
rs2267878	1.00[CEU][hapmap];0.96[GIH][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2272617	0.94[CEU][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs2284284	0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2299992	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs2299996	0.88[EUR][1000 genomes]
rs2299999	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2300000	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2300002	0.94[EUR][1000 genomes]
rs34723270	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34754517	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55643449	0.85[EUR][1000 genomes]
rs67133820	0.85[EUR][1000 genomes]
rs6958333	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs6964282	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6977003	0.89[EUR][1000 genomes]
rs6980041	0.89[EUR][1000 genomes]
rs71568512	0.85[EUR][1000 genomes]
rs73199565	0.96[EUR][1000 genomes]
rs7776972	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784186	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7789291	0.94[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs7795834	1.00[CEU][hapmap];0.96[GIH][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7796675	0.81[EUR][1000 genomes]
rs7809003	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107893800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:107887400-107894000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:107887800-107894000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:107888000-107906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:107889400-107893800	Weak transcription	HMEC	breast
7	chr7:107889400-107894200	Weak transcription	Osteobl	bone
8	chr7:107891800-107895400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:107892000-107893800	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:107892000-107894000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:107892000-107894000	Enhancers	Brain Angular Gyrus	brain
12	chr7:107892000-107894000	Enhancers	Brain Hippocampus Middle	brain
13	chr7:107892000-107894000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:107892000-107894200	Enhancers	Brain Anterior Caudate	brain
15	chr7:107892000-107894600	Enhancers	K562	blood
16	chr7:107892000-107894800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:107892000-107895200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:107892600-107906600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:107892800-107894000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:107893000-107893800	Enhancers	Brain Substantia Nigra	brain
21	chr7:107893000-107895000	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr7:107893200-107907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:107893600-107894000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr7:107893600-107894000	Enhancers	Pancreas	Pancrea
25	chr7:107893600-107894400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:107893600-107894800	Flanking Active TSS	A549	lung

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