Variant report

Variant	rs17333533
Chromosome Location	chr12:21505316-21505317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:21502651..21506189-chr12:21507967..21511740,6	K562	blood:
2	chr12:21505177..21506681-chr12:21801728..21804352,2	K562	blood:
3	chr12:21504183..21506803-chr12:21507531..21510884,5	K562	blood:

Variant related genes	Relation type
ENSG00000121351	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10444413	1.00[ASW][hapmap]
rs10841767	1.00[LWK][hapmap]
rs10841768	1.00[LWK][hapmap]
rs10841795	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045796	1.00[ASW][hapmap]
rs11045797	1.00[ASW][hapmap]
rs11045824	1.00[ASW][hapmap]
rs11045863	1.00[LWK][hapmap]
rs11045871	1.00[LWK][hapmap]
rs11045872	1.00[LWK][hapmap]
rs11045891	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045918	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045946	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045957	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045961	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs12372124	1.00[ASW][hapmap]
rs12809265	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12817281	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12818296	1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12831290	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17680758	0.84[EUR][1000 genomes]
rs17681255	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs17681288	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs2169969	1.00[LWK][hapmap]
rs34758237	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35197974	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36176879	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4337089	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs7959775	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7959833	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7960160	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21504000-21505800	Enhancers	K562	blood
2	chr12:21504200-21506800	Enhancers	Liver	Liver
3	chr12:21504200-21513200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:21505200-21507200	Active TSS	Pancreatic Islets	Pancreatic Islet

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