Variant report

Variant	rs17681255
Chromosome Location	chr12:21544661-21544662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:21544378..21545319-chr4:2144383..2145235,2	MCF-7	breast:
2	chr12:21527361..21529300-chr12:21544200..21546826,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10841767	1.00[LWK][hapmap]
rs10841768	1.00[LWK][hapmap]
rs10841795	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045863	1.00[LWK][hapmap]
rs11045871	1.00[LWK][hapmap]
rs11045872	1.00[LWK][hapmap]
rs11045891	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045918	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045946	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045957	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs11045961	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs12322793	0.85[EUR][1000 genomes]
rs12322891	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12817281	1.00[AFR][1000 genomes]
rs12818296	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs12831290	1.00[AFR][1000 genomes]
rs17333533	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs17681288	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2110163	1.00[CEU][hapmap]
rs2192174	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34758237	1.00[AFR][1000 genomes]
rs35197974	1.00[AFR][1000 genomes]
rs36176879	1.00[AFR][1000 genomes]
rs4337089	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs7959775	1.00[AFR][1000 genomes]
rs7959833	1.00[AFR][1000 genomes]
rs7960160	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469161	chr12:21507702-21555691	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv557737	chr12:21507702-21555691	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1040888	chr12:21522271-21568550	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv519603	chr12:21526472-21584709	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv470274	chr12:21531437-21568050	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv469162	chr12:21532100-21568051	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv557740	chr12:21532100-21568051	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21537400-21547200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:21544400-21545200	Enhancers	K562	blood
3	chr12:21544600-21547000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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