Variant report
| Variant | rs17337601 |
|---|---|
| Chromosome Location | chr11:4940838-4940839 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 11:4940074-4947279..11:4988858-5002113 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000225003 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10500626 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10836955 | 0.87[AMR][1000 genomes] |
| rs12793425 | 0.84[EUR][1000 genomes] |
| rs12796015 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12796618 | 0.81[AMR][1000 genomes] |
| rs12799928 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12802922 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12806727 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17251220 | 0.89[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17251261 | 0.89[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17329242 | 0.84[EUR][1000 genomes] |
| rs17337649 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2412395 | 0.85[EUR][1000 genomes] |
| rs34301246 | 0.84[EUR][1000 genomes] |
| rs34583466 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34742470 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35408660 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35720831 | 0.85[EUR][1000 genomes] |
| rs35918613 | 0.84[EUR][1000 genomes] |
| rs7925039 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
