Variant report
| Variant | rs35408660 |
|---|---|
| Chromosome Location | chr11:4930313-4930314 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10500626 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12793425 | 0.89[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12796015 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12796618 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12799928 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12802922 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12806727 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17251220 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17251261 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17329242 | 0.89[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17337601 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17337649 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2412395 | 0.87[EUR][1000 genomes] |
| rs34301246 | 0.89[EUR][1000 genomes] |
| rs34583466 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs34742470 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35720831 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35918613 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4910691 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7925039 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 4 | nsv896917 | chr11:4917089-4935470 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:4930000-4930600 | Enhancers | HUES64 Cell Line | embryonic stem cell |
