Variant report

Variant	rs17341098
Chromosome Location	chr10:4092430-4092431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11252347	0.87[YRI][hapmap]
rs17131999	1.00[AMR][1000 genomes]
rs17256445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4087200-4092800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:4087200-4093200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:4087400-4093000	Weak transcription	HUVEC	blood vessel
4	chr10:4087400-4093400	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:4088800-4093200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:4089400-4093200	Weak transcription	Fetal Kidney	kidney
7	chr10:4089600-4092800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:4091000-4092800	Weak transcription	Small Intestine	intestine
9	chr10:4091000-4093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:4091200-4093400	Weak transcription	Aorta	Aorta
11	chr10:4091200-4093400	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:4091200-4093400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:4092000-4092800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:4092200-4093200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:4092400-4093200	Weak transcription	Ovary	ovary
16	chr10:4092400-4093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:4092400-4094000	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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