Variant report

Variant	rs17256445
Chromosome Location	chr10:4103907-4103908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4100357..4102296-chr10:4102463..4105433,2	K562	blood:
2	chr10:3827665..3830357-chr10:4102508..4105467,3	K562	blood:
3	chr10:3827232..3829993-chr10:4098770..4104169,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11252347	0.87[YRI][hapmap]
rs12242929	0.85[EUR][1000 genomes]
rs17131999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132022	0.84[EUR][1000 genomes]
rs17132024	0.84[EUR][1000 genomes]
rs17132053	0.84[EUR][1000 genomes]
rs17341098	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4397729	0.96[EUR][1000 genomes]
rs4539213	0.96[EUR][1000 genomes]
rs7902922	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4094400-4109800	Weak transcription	Right Ventricle	heart
2	chr10:4099600-4105400	Weak transcription	Pancreas	Pancrea
3	chr10:4100600-4104400	Enhancers	Colon Smooth Muscle	Colon
4	chr10:4100800-4104200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:4100800-4104200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:4100800-4104400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:4100800-4104600	Enhancers	Primary T cells from cord blood	blood
8	chr10:4101000-4110000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:4101200-4104200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:4101400-4104400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:4101600-4104200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:4101600-4104200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:4101800-4104000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:4102000-4104000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr10:4102000-4104000	Enhancers	Stomach Smooth Muscle	stomach
16	chr10:4102400-4109200	Weak transcription	Spleen	Spleen
17	chr10:4102600-4104200	Enhancers	Dnd41	blood
18	chr10:4102600-4109400	Weak transcription	Thymus	Thymus
19	chr10:4103200-4105000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:4103400-4104200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:4103400-4104200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr10:4103400-4104200	Enhancers	Fetal Intestine Large	intestine
23	chr10:4103400-4104200	Enhancers	Fetal Thymus	thymus
24	chr10:4103400-4104200	Enhancers	Rectal Smooth Muscle	rectum
25	chr10:4103400-4104400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:4103400-4104400	Enhancers	Small Intestine	intestine
27	chr10:4103400-4104800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:4103400-4104800	Enhancers	Right Atrium	heart
29	chr10:4103400-4105000	Enhancers	Adipose Nuclei	Adipose
30	chr10:4103400-4105000	Enhancers	Ovary	ovary
31	chr10:4103400-4105000	Enhancers	Stomach Mucosa	stomach
32	chr10:4103400-4106200	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr10:4103600-4104000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:4103600-4104000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:4103600-4104000	Enhancers	Esophagus	oesophagus
36	chr10:4103600-4104000	Enhancers	Fetal Muscle Leg	muscle
37	chr10:4103600-4104000	Enhancers	Gastric	stomach
38	chr10:4103600-4104200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:4103600-4104200	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr10:4103600-4104200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr10:4103600-4104200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:4103600-4104200	Enhancers	Aorta	Aorta
43	chr10:4103600-4104200	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr10:4103600-4104200	Enhancers	Placenta	Placenta
45	chr10:4103600-4104200	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:4103600-4104200	Flanking Active TSS	Osteobl	bone
47	chr10:4103600-4104400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:4103600-4104600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:4103600-4104600	Enhancers	Fetal Lung	lung
50	chr10:4103600-4104600	Enhancers	Placenta Amnion	Placenta Amnion

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