Variant report

Variant	rs17132024
Chromosome Location	chr10:4126900-4126901
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10218901	1.00[ASN][1000 genomes]
rs11252250	1.00[ASN][1000 genomes]
rs11252347	0.87[YRI][hapmap]
rs12242929	0.85[EUR][1000 genomes]
rs12260537	1.00[ASN][1000 genomes]
rs12261882	1.00[ASN][1000 genomes]
rs17131999	0.84[EUR][1000 genomes]
rs17132022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132053	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17256445	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs17341098	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs4242768	1.00[ASN][1000 genomes]
rs4397729	0.89[EUR][1000 genomes]
rs4539213	0.89[EUR][1000 genomes]
rs4880662	0.92[EUR][1000 genomes]
rs56043214	1.00[ASN][1000 genomes]
rs59137764	1.00[ASN][1000 genomes]
rs61829210	1.00[ASN][1000 genomes]
rs61829222	1.00[ASN][1000 genomes]
rs7072426	1.00[ASN][1000 genomes]
rs7074419	1.00[ASN][1000 genomes]
rs74117007	1.00[ASN][1000 genomes]
rs7902922	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4121800-4128200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:4123600-4127400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:4123600-4128400	Enhancers	Adipose Nuclei	Adipose
4	chr10:4123600-4128800	Enhancers	Fetal Heart	heart
5	chr10:4124200-4128200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:4124800-4127000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:4125800-4128200	Weak transcription	Brain Germinal Matrix	brain
8	chr10:4125800-4128600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:4126000-4128200	Weak transcription	Psoas Muscle	Psoas
10	chr10:4126000-4128600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:4126000-4128600	Weak transcription	Right Atrium	heart
12	chr10:4126200-4127200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:4126200-4127200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:4126200-4127200	Weak transcription	Left Ventricle	heart
15	chr10:4126200-4128000	Weak transcription	Fetal Brain Male	brain
16	chr10:4126200-4128200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:4126200-4128200	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:4126200-4128200	Weak transcription	Ovary	ovary
19	chr10:4126200-4128200	Weak transcription	Osteobl	bone
20	chr10:4126200-4128400	Weak transcription	Aorta	Aorta
21	chr10:4126200-4128400	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:4126200-4128400	Weak transcription	Right Ventricle	heart
23	chr10:4126200-4128400	Weak transcription	HUVEC	blood vessel
24	chr10:4126200-4128600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:4126200-4128600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:4126200-4128800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:4126400-4127600	Weak transcription	Fetal Lung	lung
28	chr10:4126400-4128200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:4126400-4128200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:4126400-4128200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:4126400-4128200	Weak transcription	Fetal Brain Female	brain
32	chr10:4126400-4128400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:4126400-4128600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:4126400-4128800	Weak transcription	Fetal Kidney	kidney
35	chr10:4126800-4128200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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