Variant report

Variant	rs59137764
Chromosome Location	chr10:4071088-4071089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218901	1.00[ASN][1000 genomes]
rs11252250	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260537	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261882	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132022	1.00[ASN][1000 genomes]
rs17132024	1.00[ASN][1000 genomes]
rs17132053	1.00[ASN][1000 genomes]
rs4242768	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043214	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829210	1.00[ASN][1000 genomes]
rs61829222	1.00[ASN][1000 genomes]
rs61829235	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7072426	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074419	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74117007	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4066400-4081200	Weak transcription	Gastric	stomach
2	chr10:4067400-4077000	Weak transcription	Right Atrium	heart
3	chr10:4068000-4072800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:4069200-4075000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:4069600-4075200	Weak transcription	NHDF-Ad	bronchial
6	chr10:4070000-4071200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4070000-4071200	Enhancers	Colon Smooth Muscle	Colon
8	chr10:4070000-4071200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:4070400-4072000	Weak transcription	Lung	lung
10	chr10:4070400-4077200	Weak transcription	Esophagus	oesophagus
11	chr10:4070600-4071800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:4070600-4071800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:4071000-4072200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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