Variant report

Variant	rs4242768
Chromosome Location	chr10:4029755-4029756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4027244..4030935-chr10:4035153..4038693,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10218901	1.00[ASN][1000 genomes]
rs11252250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260537	1.00[ASN][1000 genomes]
rs12261882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132022	1.00[ASN][1000 genomes]
rs17132024	1.00[ASN][1000 genomes]
rs17132053	1.00[ASN][1000 genomes]
rs17256445	1.00[MEX][hapmap]
rs17341098	1.00[MEX][hapmap]
rs2025681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56043214	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59137764	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829210	1.00[ASN][1000 genomes]
rs61829222	1.00[ASN][1000 genomes]
rs7072426	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074419	1.00[ASN][1000 genomes]
rs74117007	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4020200-4032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4022200-4036400	Weak transcription	Right Atrium	heart
3	chr10:4028200-4033800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:4028600-4031600	Weak transcription	Fetal Thymus	thymus
5	chr10:4028800-4032000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:4029200-4029800	Enhancers	Left Ventricle	heart
7	chr10:4029200-4029800	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr10:4029200-4030400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:4029200-4030600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:4029200-4031200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:4029400-4030400	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:4029400-4030400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:4029400-4030600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:4029400-4030600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:4029400-4030600	Enhancers	Fetal Heart	heart
16	chr10:4029400-4030600	Enhancers	HSMM	muscle
17	chr10:4029400-4030600	Enhancers	NHDF-Ad	bronchial
18	chr10:4029400-4030600	Enhancers	NHLF	lung
19	chr10:4029600-4030000	Enhancers	Fetal Intestine Large	intestine
20	chr10:4029600-4030400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr10:4029600-4030400	Enhancers	HSMMtube	muscle
22	chr10:4029600-4031200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:4029600-4034000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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