Variant report

Variant	rs12261882
Chromosome Location	chr10:4037831-4037832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4027244..4030935-chr10:4035153..4038693,4	K562	blood:
2	chr10:4033984..4038584-chr10:4038783..4042645,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218901	1.00[ASN][1000 genomes]
rs11252250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260537	1.00[ASN][1000 genomes]
rs17132022	1.00[ASN][1000 genomes]
rs17132024	1.00[ASN][1000 genomes]
rs17132053	1.00[ASN][1000 genomes]
rs2025681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4242768	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59137764	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829210	1.00[ASN][1000 genomes]
rs61829222	1.00[ASN][1000 genomes]
rs7072426	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074419	1.00[ASN][1000 genomes]
rs74117007	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4036800-4038400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:4036800-4043200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4037000-4038200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:4037000-4038200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:4037000-4038600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:4037200-4038400	Enhancers	NHDF-Ad	bronchial
7	chr10:4037400-4038400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:4037400-4038600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:4037600-4038000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:4037600-4038200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:4037600-4038200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:4037600-4038200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:4037600-4038400	Enhancers	HSMM	muscle
14	chr10:4037600-4038400	Enhancers	HUVEC	blood vessel
15	chr10:4037600-4038600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:4037600-4038600	Enhancers	HMEC	breast
17	chr10:4037600-4038600	Enhancers	NHEK	skin
18	chr10:4037600-4038600	Enhancers	Osteobl	bone
19	chr10:4037800-4038000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:4037800-4038000	Enhancers	Fetal Kidney	kidney
21	chr10:4037800-4038000	Enhancers	HSMMtube	muscle
22	chr10:4037800-4038200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr10:4037800-4038200	Enhancers	NH-A	brain
24	chr10:4037800-4039800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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