Variant report

Variant	rs11252250
Chromosome Location	chr10:4039217-4039218
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218901	1.00[ASN][1000 genomes]
rs12260537	1.00[ASN][1000 genomes]
rs12261882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132022	1.00[ASN][1000 genomes]
rs17132024	1.00[ASN][1000 genomes]
rs17132053	1.00[ASN][1000 genomes]
rs2025681	0.95[EUR][1000 genomes]
rs4242768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59137764	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829210	1.00[ASN][1000 genomes]
rs61829222	1.00[ASN][1000 genomes]
rs7072426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074419	1.00[ASN][1000 genomes]
rs74117007	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4036800-4043200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4037800-4039800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:4038600-4042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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