Variant report

Variant	rs7902922
Chromosome Location	chr10:4301406-4301407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826008..3828712-chr10:4299777..4301639,2	MCF-7	breast:
2	chr10:4243895..4246337-chr10:4299306..4301962,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17256445	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044535	chr10:4271872-4306421	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1053322	chr10:4279301-4306798	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1052378	chr10:4286880-4307024	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1043787	chr10:4286880-4307322	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1050694	chr10:4290802-4306798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3458618	chr10:4293384-4311663	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3458507	chr10:4293418-4311634	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3458730	chr10:4293489-4311565	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1037897	chr10:4294071-4311585	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4292800-4301800	Weak transcription	Hela-S3	cervix
2	chr10:4296800-4302200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:4296800-4308800	Weak transcription	Psoas Muscle	Psoas
4	chr10:4297000-4302000	Weak transcription	Osteobl	bone
5	chr10:4297000-4302200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:4297000-4302200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4297000-4302200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:4297600-4302200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:4298200-4305800	Weak transcription	Aorta	Aorta
10	chr10:4298400-4302200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:4298400-4302400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:4298600-4302400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:4298600-4302400	Weak transcription	NHEK	skin
14	chr10:4298800-4302600	Weak transcription	HMEC	breast
15	chr10:4300000-4302200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:4300200-4302200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:4300400-4302200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:4300600-4302000	Weak transcription	NHDF-Ad	bronchial
19	chr10:4300600-4302200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:4300600-4306000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:4300800-4303200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:4301000-4302600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:4301200-4301600	Enhancers	Gastric	stomach
24	chr10:4301200-4302600	Enhancers	Ovary	ovary
25	chr10:4301400-4301600	Enhancers	Stomach Smooth Muscle	stomach
26	chr10:4301400-4301600	Enhancers	Spleen	Spleen
27	chr10:4301400-4301800	Enhancers	Lung	lung
28	chr10:4301400-4301800	Enhancers	Pancreas	Pancrea
29	chr10:4301400-4302800	Enhancers	Right Atrium	heart
30	chr10:4301400-4303200	Enhancers	Fetal Stomach	stomach
31	chr10:4301400-4303800	Enhancers	Rectal Smooth Muscle	rectum

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