Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10468265	0.90[CEU][hapmap]
rs12149254	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12325234	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes]
rs12444212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12444714	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12448992	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12918320	1.00[CEU][hapmap]
rs12919092	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12922597	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12922830	0.81[EUR][1000 genomes]
rs12927445	0.83[AFR][1000 genomes]
rs12934168	1.00[ASN][1000 genomes]
rs16972808	0.90[CEU][hapmap]
rs16973112	0.90[CEU][hapmap]
rs16973190	0.90[CEU][hapmap]
rs2033251	0.83[YRI][hapmap]
rs2052873	0.90[CEU][hapmap]
rs34400718	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35166226	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886947	0.89[CEU][hapmap]
rs6499520	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs66778248	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7188475	1.00[JPT][hapmap]
rs8051439	0.89[CEU][hapmap]
rs8054221	1.00[ASN][1000 genomes]
rs8056735	0.90[CEU][hapmap]
rs8060176	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17343777	RP11-510M2.10	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71434800-71446600	Weak transcription	Right Atrium	heart
2	chr16:71436600-71446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:71438600-71439200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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