Variant report

Variant	rs35166226
Chromosome Location	chr16:71443219-71443220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12149254	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12325234	0.82[EUR][1000 genomes]
rs12444212	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12444714	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12448992	0.88[EUR][1000 genomes]
rs12919092	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12922597	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12922830	0.83[EUR][1000 genomes]
rs12934168	1.00[ASN][1000 genomes]
rs17343777	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34400718	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6499520	0.86[EUR][1000 genomes]
rs66778248	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054221	1.00[ASN][1000 genomes]
rs8060176	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35166226	RP11-510M2.10	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71434800-71446600	Weak transcription	Right Atrium	heart
2	chr16:71436600-71446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:71439200-71445800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:71441800-71446400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr16:71442400-71443400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:71442400-71444000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:71442800-71446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr16:71443000-71443400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr16:71443200-71443400	Flanking Active TSS	K562	blood
10	chr16:71443200-71446200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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