Variant report

Variant	rs1734395
Chromosome Location	chr2:10986902-10986903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr2:10986704-10987183	HepG2	liver:	n/a	chr2:10987120-10987134
2	NR3C1	chr2:10986240-10986944	A549	lung:	n/a	chr2:10986512-10986526 chr2:10986506-10986532 chr2:10986512-10986526 chr2:10986511-10986527 chr2:10986511-10986527 chr2:10986449-10986475 chr2:10986508-10986529 chr2:10986510-10986528 chr2:10986506-10986532 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986511-10986528 chr2:10986509-10986530 chr2:10986449-10986475 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986506-10986532 chr2:10986512-10986526
3	NR3C1	chr2:10986299-10986992	A549	lung:	n/a	chr2:10986512-10986526 chr2:10986506-10986532 chr2:10986512-10986526 chr2:10986511-10986527 chr2:10986511-10986527 chr2:10986449-10986475 chr2:10986508-10986529 chr2:10986510-10986528 chr2:10986506-10986532 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986511-10986528 chr2:10986509-10986530 chr2:10986449-10986475 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986506-10986532 chr2:10986512-10986526
4	MAFK	chr2:10986719-10986908	HepG2	liver:	n/a	n/a
5	REST	chr2:10986620-10987062	H1-neurons	neurons:	n/a	n/a
6	MAFF	chr2:10986736-10986934	HepG2	liver:	n/a	n/a
7	FOXA1	chr2:10986197-10986918	A549	lung:	n/a	n/a
8	NR3C1	chr2:10986312-10986921	A549	lung:	n/a	chr2:10986512-10986526 chr2:10986506-10986532 chr2:10986512-10986526 chr2:10986511-10986527 chr2:10986511-10986527 chr2:10986449-10986475 chr2:10986508-10986529 chr2:10986510-10986528 chr2:10986506-10986532 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986511-10986528 chr2:10986509-10986530 chr2:10986449-10986475 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986506-10986532 chr2:10986512-10986526
9	ARID3A	chr2:10986594-10986926	HepG2	liver:	n/a	n/a
10	HDAC2	chr2:10986597-10986942	HepG2	liver:	n/a	n/a
11	NR3C1	chr2:10986220-10987035	A549	lung:	n/a	chr2:10986512-10986526 chr2:10986506-10986532 chr2:10986512-10986526 chr2:10986511-10986527 chr2:10986511-10986527 chr2:10986449-10986475 chr2:10986508-10986529 chr2:10986510-10986528 chr2:10986506-10986532 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986511-10986528 chr2:10986509-10986530 chr2:10986449-10986475 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986506-10986532 chr2:10986512-10986526
12	NR3C1	chr2:10986190-10987097	A549	lung:	n/a	chr2:10986512-10986526 chr2:10986506-10986532 chr2:10986512-10986526 chr2:10986511-10986527 chr2:10986511-10986527 chr2:10986449-10986475 chr2:10986508-10986529 chr2:10986510-10986528 chr2:10986506-10986532 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10987031-10987038 chr2:10986511-10986528 chr2:10986509-10986530 chr2:10986449-10986475 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986506-10986532 chr2:10986512-10986526
13	TEAD4	chr2:10986555-10987058	HepG2	liver:	n/a	n/a
14	NR3C1	chr2:10986624-10986911	A549	lung:	n/a	n/a
15	FOXA2	chr2:10986641-10986933	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10984035..10986902-chr2:10994929..10997652,2	MCF-7	breast:
2	chr2:10975730..10978312-chr2:10984750..10987665,2	K562	blood:

Variant related genes	Relation type
ENSG00000232056	TF binding region
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1627878	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1628911	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1686461	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686462	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1686463	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1686465	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1686466	0.89[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1686467	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1686468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734396	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734397	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1734398	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1734399	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2357818	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2357819	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2884291	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2969891	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4669633	0.86[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10979400-11000400	Weak transcription	Fetal Brain Male	brain
2	chr2:10984200-10987000	Active TSS	Right Ventricle	heart
3	chr2:10984200-10987400	Enhancers	Fetal Heart	heart
4	chr2:10984400-10988000	Active TSS	Right Atrium	heart
5	chr2:10984400-10988600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:10984600-10987000	Weak transcription	Lung	lung
7	chr2:10984800-10987000	Enhancers	Fetal Muscle Leg	muscle
8	chr2:10984800-10988800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:10985800-10987200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:10985800-10988000	Enhancers	HepG2	liver
11	chr2:10986000-10987200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:10986000-10987200	Enhancers	Brain Anterior Caudate	brain
13	chr2:10986000-10988000	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:10986000-10988000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr2:10986000-10989000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:10986200-10987200	Weak transcription	Gastric	stomach
17	chr2:10986400-10988800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr2:10986600-10987000	Enhancers	Left Ventricle	heart
19	chr2:10986600-10987000	Weak transcription	Psoas Muscle	Psoas
20	chr2:10986600-10987200	Enhancers	HSMMtube	muscle
21	chr2:10986800-10987000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:10986800-10987000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr2:10986800-10987000	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr2:10986800-10987400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:10986800-10987600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links