Variant report

Variant	rs1686466
Chromosome Location	chr2:10987055-10987056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr2:10986704-10987183	HepG2	liver:	n/a	chr2:10987120-10987134
2	REST	chr2:10986620-10987062	H1-neurons	neurons:	n/a	n/a
3	NR3C1	chr2:10986190-10987097	A549	lung:	n/a	chr2:10986512-10986526 chr2:10986506-10986532 chr2:10986512-10986526 chr2:10986511-10986527 chr2:10986511-10986527 chr2:10986449-10986475 chr2:10986508-10986529 chr2:10986510-10986528 chr2:10986506-10986532 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10987031-10987038 chr2:10986511-10986528 chr2:10986509-10986530 chr2:10986449-10986475 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986506-10986532 chr2:10986512-10986526
4	TEAD4	chr2:10986555-10987058	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10975730..10978312-chr2:10984750..10987665,2	K562	blood:

Variant related genes	Relation type
ENSG00000232056	TF binding region
ENSG00000143870	Chromatin interaction

rs_ID	r²[population]
rs1627878	0.84[ASN][1000 genomes]
rs1628911	0.89[ASN][1000 genomes]
rs1686461	0.85[ASN][1000 genomes]
rs1686462	0.88[ASN][1000 genomes]
rs1686463	0.88[ASN][1000 genomes]
rs1686465	0.89[ASN][1000 genomes]
rs1686467	0.89[ASN][1000 genomes]
rs1686468	0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs1734390	0.81[ASN][1000 genomes]
rs1734391	0.81[ASN][1000 genomes]
rs1734392	0.81[ASN][1000 genomes]
rs1734395	0.89[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1734396	0.89[ASN][1000 genomes]
rs1734397	0.88[ASN][1000 genomes]
rs1734398	0.88[ASN][1000 genomes]
rs1734399	0.88[ASN][1000 genomes]
rs2357818	0.88[ASN][1000 genomes]
rs2357819	0.88[ASN][1000 genomes]
rs2884291	0.88[ASN][1000 genomes]
rs2969891	0.88[ASN][1000 genomes]
rs4669633	0.92[CEU][hapmap];0.92[EUR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10979400-11000400	Weak transcription	Fetal Brain Male	brain
2	chr2:10984200-10987400	Enhancers	Fetal Heart	heart
3	chr2:10984400-10988000	Active TSS	Right Atrium	heart
4	chr2:10984400-10988600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:10984800-10988800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:10985800-10987200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:10985800-10988000	Enhancers	HepG2	liver
8	chr2:10986000-10987200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:10986000-10987200	Enhancers	Brain Anterior Caudate	brain
10	chr2:10986000-10988000	Enhancers	Brain Cingulate Gyrus	brain
11	chr2:10986000-10988000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr2:10986000-10989000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:10986200-10987200	Weak transcription	Gastric	stomach
14	chr2:10986400-10988800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr2:10986600-10987200	Enhancers	HSMMtube	muscle
16	chr2:10986800-10987400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:10986800-10987600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr2:10987000-10987200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:10987000-10987200	Flanking Active TSS	Left Ventricle	heart
20	chr2:10987000-10987200	Enhancers	Lung	lung
21	chr2:10987000-10987200	Enhancers	Psoas Muscle	Psoas
22	chr2:10987000-10987200	Active TSS	Stomach Smooth Muscle	stomach
23	chr2:10987000-10987400	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr2:10987000-10987400	Flanking Active TSS	Right Ventricle	heart
25	chr2:10987000-10989200	Enhancers	Skeletal Muscle Male	skeletal muscle

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