Variant report

Variant	rs1734392
Chromosome Location	chr2:10985695-10985696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10983477..10986559-chr2:11261395..11265674,4	MCF-7	breast:
2	chr2:10975730..10978665-chr2:10984710..10986250,2	K562	blood:
3	chr2:10984035..10986902-chr2:10994929..10997652,2	MCF-7	breast:
4	chr2:10975730..10978312-chr2:10984750..10987665,2	K562	blood:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1565324	0.80[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1623958	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1686466	0.81[ASN][1000 genomes]
rs1686472	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1686478	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1734370	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1734390	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734391	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10979400-11000400	Weak transcription	Fetal Brain Male	brain
2	chr2:10984200-10987000	Active TSS	Right Ventricle	heart
3	chr2:10984200-10987400	Enhancers	Fetal Heart	heart
4	chr2:10984400-10985800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr2:10984400-10986000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:10984400-10986400	Active TSS	Left Ventricle	heart
7	chr2:10984400-10988000	Active TSS	Right Atrium	heart
8	chr2:10984400-10988600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:10984600-10985800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:10984600-10986600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:10984600-10987000	Weak transcription	Lung	lung
12	chr2:10984800-10985800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:10984800-10985800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:10984800-10985800	Weak transcription	Pancreas	Pancrea
15	chr2:10984800-10986000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:10984800-10986000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:10984800-10986000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:10984800-10987000	Enhancers	Fetal Muscle Leg	muscle
19	chr2:10984800-10988800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:10985400-10986400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr2:10985400-10986800	Enhancers	Stomach Smooth Muscle	stomach
22	chr2:10985600-10985800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr2:10985600-10986600	Enhancers	Psoas Muscle	Psoas
24	chr2:10985600-10986800	Enhancers	Colon Smooth Muscle	Colon

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