Variant report

Variant	rs1686478
Chromosome Location	chr2:10978846-10978847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1565324	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623958	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1686472	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1686481	0.86[ASN][1000 genomes]
rs1734370	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1734390	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1734391	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1734392	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10973000-10980200	Weak transcription	Right Atrium	heart
2	chr2:10976800-10979200	Enhancers	Fetal Brain Female	brain
3	chr2:10977000-10979400	Enhancers	Brain Germinal Matrix	brain
4	chr2:10978800-10979200	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links