Variant report

Variant	rs1734442
Chromosome Location	chr2:10970102-10970103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10968492..10971242-chr2:10972416..10974163,2	MCF-7	breast:
2	chr2:10958613..10961518-chr2:10969004..10971574,2	K562	blood:
3	chr2:10968173..10970876-chr2:11621344..11624039,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10204298	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1106184	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap]
rs1106186	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13018915	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1626087	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1627163	0.88[CHB][hapmap]
rs1686486	1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1686487	0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1686488	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1686489	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1686491	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1686492	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1686495	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1686496	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1686498	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1734403	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1734404	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1734406	1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1734407	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1734408	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1734443	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1734444	0.94[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs17365477	0.81[GIH][hapmap]
rs2130285	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2969886	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34533775	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62120277	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524969	chr2:10969564-10971017	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1734442	RSAD2	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
2	chr2:10963600-10971800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:10968200-10973000	Enhancers	Liver	Liver
4	chr2:10968200-10973200	Enhancers	Spleen	Spleen
5	chr2:10968400-10972400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:10968600-10971000	Enhancers	Gastric	stomach
7	chr2:10968800-10970200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:10968800-10972400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:10969000-10970800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr2:10969200-10971000	Enhancers	Stomach Mucosa	stomach
11	chr2:10969400-10970600	Enhancers	Pancreas	Pancrea
12	chr2:10969600-10970400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr2:10970000-10970400	Bivalent Enhancer	Colonic Mucosa	Colon
14	chr2:10970000-10970800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
15	chr2:10970000-10973200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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