Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:10968492..10971242-chr2:10972416..10974163,2	MCF-7	breast:
2	chr2:10958613..10961518-chr2:10969004..10971574,2	K562	blood:
3	chr2:10968173..10970876-chr2:11621344..11624039,2	MCF-7	breast:
4	chr2:10951152..10953579-chr2:10968229..10970049,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10204298	0.87[ASN][1000 genomes]
rs1106184	0.94[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap]
rs1106185	0.85[GIH][hapmap]
rs1106186	0.94[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs13018915	0.94[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs1626087	0.94[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes]
rs1627163	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs1686486	0.94[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1686487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1686488	0.92[ASN][1000 genomes]
rs1686489	0.92[ASN][1000 genomes]
rs1686491	0.86[ASN][1000 genomes]
rs1686492	0.92[ASN][1000 genomes]
rs1686495	0.84[ASN][1000 genomes]
rs1686496	0.92[ASN][1000 genomes]
rs1686498	0.90[ASN][1000 genomes]
rs1734403	0.92[ASN][1000 genomes]
rs1734404	0.92[ASN][1000 genomes]
rs1734406	0.94[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes]
rs1734407	0.92[ASN][1000 genomes]
rs1734408	0.89[ASN][1000 genomes]
rs1734442	0.94[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs1734443	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2130285	0.92[ASN][1000 genomes]
rs2969886	0.92[ASN][1000 genomes]
rs34533775	0.90[ASN][1000 genomes]
rs62120277	0.83[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1734444	RSAD2	cis	parietal	SCAN
rs1734444	YWHAQ	cis	parietal	SCAN
rs1734444	GRHL1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
2	chr2:10963600-10971800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:10968200-10973000	Enhancers	Liver	Liver
4	chr2:10968200-10973200	Enhancers	Spleen	Spleen
5	chr2:10968400-10972400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:10968600-10969400	Bivalent Enhancer	Colonic Mucosa	Colon
7	chr2:10968600-10971000	Enhancers	Gastric	stomach
8	chr2:10968800-10970200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:10968800-10972400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:10969000-10970800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr2:10969200-10971000	Enhancers	Stomach Mucosa	stomach

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